Protein–RNA interactions for Protein: Q8BGE6

Atg4b, Cysteine protease ATG4B, mousemouse

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4bQ8BGE6 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Atg4bQ8BGE6 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4bQ8BGE6 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4bQ8BGE6 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4bQ8BGE6 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Atg4bQ8BGE6 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.67■□□□□ 0.9
Atg4bQ8BGE6 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
Atg4bQ8BGE6 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Atg4bQ8BGE6 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC20.67■□□□□ 0.9
Atg4bQ8BGE6 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.67■□□□□ 0.9
Atg4bQ8BGE6 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Atg4bQ8BGE6 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Atg4bQ8BGE6 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.66■□□□□ 0.9
Atg4bQ8BGE6 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Atg4bQ8BGE6 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Atg4bQ8BGE6 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Atg4bQ8BGE6 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Atg4bQ8BGE6 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Atg4bQ8BGE6 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Atg4bQ8BGE6 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Atg4bQ8BGE6 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Atg4bQ8BGE6 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Atg4bQ8BGE6 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Atg4bQ8BGE6 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Atg4bQ8BGE6 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Atg4bQ8BGE6 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Atg4bQ8BGE6 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Atg4bQ8BGE6 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Atg4bQ8BGE6 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.63■□□□□ 0.89
Atg4bQ8BGE6 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Atg4bQ8BGE6 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Atg4bQ8BGE6 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Atg4bQ8BGE6 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Atg4bQ8BGE6 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Atg4bQ8BGE6 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.62■□□□□ 0.89
Atg4bQ8BGE6 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Atg4bQ8BGE6 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Atg4bQ8BGE6 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC20.62■□□□□ 0.89
Atg4bQ8BGE6 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Atg4bQ8BGE6 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Atg4bQ8BGE6 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.61■□□□□ 0.89
Atg4bQ8BGE6 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Atg4bQ8BGE6 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Atg4bQ8BGE6 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Atg4bQ8BGE6 AC117245.4-201ENSMUST00000217388 1646 ntBASIC20.6■□□□□ 0.89
Atg4bQ8BGE6 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Atg4bQ8BGE6 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Atg4bQ8BGE6 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC20.6■□□□□ 0.89
Atg4bQ8BGE6 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.6■□□□□ 0.89
Atg4bQ8BGE6 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Atg4bQ8BGE6 Cap2-205ENSMUST00000225824 1634 ntBASIC20.6■□□□□ 0.89
Atg4bQ8BGE6 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Atg4bQ8BGE6 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Atg4bQ8BGE6 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Atg4bQ8BGE6 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Atg4bQ8BGE6 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Atg4bQ8BGE6 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Atg4bQ8BGE6 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Atg4bQ8BGE6 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Atg4bQ8BGE6 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Atg4bQ8BGE6 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC20.58■□□□□ 0.89
Atg4bQ8BGE6 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Atg4bQ8BGE6 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Atg4bQ8BGE6 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Atg4bQ8BGE6 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Atg4bQ8BGE6 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Atg4bQ8BGE6 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Atg4bQ8BGE6 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Atg4bQ8BGE6 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Atg4bQ8BGE6 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Atg4bQ8BGE6 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.56■□□□□ 0.88
Atg4bQ8BGE6 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Atg4bQ8BGE6 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Atg4bQ8BGE6 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Atg4bQ8BGE6 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC20.56■□□□□ 0.88
Atg4bQ8BGE6 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Atg4bQ8BGE6 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Atg4bQ8BGE6 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Atg4bQ8BGE6 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Atg4bQ8BGE6 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Atg4bQ8BGE6 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Atg4bQ8BGE6 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Atg4bQ8BGE6 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Atg4bQ8BGE6 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Atg4bQ8BGE6 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Atg4bQ8BGE6 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Atg4bQ8BGE6 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Atg4bQ8BGE6 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Atg4bQ8BGE6 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Atg4bQ8BGE6 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Atg4bQ8BGE6 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Atg4bQ8BGE6 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Atg4bQ8BGE6 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Atg4bQ8BGE6 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Atg4bQ8BGE6 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Atg4bQ8BGE6 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC20.52■□□□□ 0.88
Atg4bQ8BGE6 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Atg4bQ8BGE6 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Atg4bQ8BGE6 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Atg4bQ8BGE6 Gm22567-201ENSMUST00000175542 342 ntBASIC20.52■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 192 ms