Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usf1Q61069 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Usf1Q61069 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usf1Q61069 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Usf1Q61069 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usf1Q61069 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Usf1Q61069 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
Usf1Q61069 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Usf1Q61069 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usf1Q61069 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usf1Q61069 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usf1Q61069 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usf1Q61069 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC20.17■□□□□ 0.82
Usf1Q61069 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.17■□□□□ 0.82
Usf1Q61069 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usf1Q61069 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Usf1Q61069 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usf1Q61069 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usf1Q61069 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usf1Q61069 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usf1Q61069 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Usf1Q61069 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Usf1Q61069 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC20.16■□□□□ 0.82
Usf1Q61069 Gm22238-201ENSMUST00000175222 88 ntBASIC20.16■□□□□ 0.82
Usf1Q61069 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usf1Q61069 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC20.16■□□□□ 0.82
Usf1Q61069 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.15■□□□□ 0.82
Usf1Q61069 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usf1Q61069 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usf1Q61069 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC20.15■□□□□ 0.82
Usf1Q61069 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.15■□□□□ 0.82
Usf1Q61069 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.15■□□□□ 0.82
Usf1Q61069 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usf1Q61069 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usf1Q61069 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Usf1Q61069 Gm21956-201ENSMUST00000179946 522 ntBASIC20.14■□□□□ 0.81
Usf1Q61069 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC20.14■□□□□ 0.81
Usf1Q61069 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usf1Q61069 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usf1Q61069 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usf1Q61069 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usf1Q61069 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Usf1Q61069 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC20.13■□□□□ 0.81
Usf1Q61069 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usf1Q61069 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Usf1Q61069 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Usf1Q61069 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Usf1Q61069 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC20.12■□□□□ 0.81
Usf1Q61069 Gm40881-201ENSMUST00000223397 166 ntBASIC20.12■□□□□ 0.81
Usf1Q61069 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC20.12■□□□□ 0.81
Usf1Q61069 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usf1Q61069 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usf1Q61069 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Usf1Q61069 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Usf1Q61069 Gm28536-201ENSMUST00000190971 1317 ntBASIC20.11■□□□□ 0.81
Usf1Q61069 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Usf1Q61069 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usf1Q61069 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usf1Q61069 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usf1Q61069 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usf1Q61069 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Usf1Q61069 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usf1Q61069 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20.1■□□□□ 0.81
Usf1Q61069 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usf1Q61069 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.09■□□□□ 0.81
Usf1Q61069 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usf1Q61069 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usf1Q61069 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usf1Q61069 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usf1Q61069 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Usf1Q61069 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Usf1Q61069 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC20.08■□□□□ 0.81
Usf1Q61069 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC20.08■□□□□ 0.81
Usf1Q61069 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usf1Q61069 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
Usf1Q61069 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC20.07■□□□□ 0.8
Usf1Q61069 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.07■□□□□ 0.8
Usf1Q61069 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Usf1Q61069 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usf1Q61069 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usf1Q61069 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC20.06■□□□□ 0.8
Usf1Q61069 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usf1Q61069 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
Usf1Q61069 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.06■□□□□ 0.8
Usf1Q61069 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usf1Q61069 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usf1Q61069 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usf1Q61069 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Usf1Q61069 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC20.05■□□□□ 0.8
Usf1Q61069 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC20.05■□□□□ 0.8
Usf1Q61069 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC20.05■□□□□ 0.8
Usf1Q61069 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Usf1Q61069 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC20.04■□□□□ 0.8
Usf1Q61069 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC20.04■□□□□ 0.8
Usf1Q61069 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usf1Q61069 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Usf1Q61069 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usf1Q61069 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usf1Q61069 Gm12922-201ENSMUST00000120626 809 ntBASIC20.03■□□□□ 0.8
Usf1Q61069 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms