Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Upf3aQ3ULJ3 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
Upf3aQ3ULJ3 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Upf3aQ3ULJ3 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Upf3aQ3ULJ3 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Upf3aQ3ULJ3 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC23.34■■□□□ 1.33
Upf3aQ3ULJ3 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC23.34■■□□□ 1.33
Upf3aQ3ULJ3 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC23.34■■□□□ 1.33
Upf3aQ3ULJ3 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Upf3aQ3ULJ3 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Upf3aQ3ULJ3 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Upf3aQ3ULJ3 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Upf3aQ3ULJ3 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Upf3aQ3ULJ3 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Upf3aQ3ULJ3 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Upf3aQ3ULJ3 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC23.33■■□□□ 1.33
Upf3aQ3ULJ3 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
Upf3aQ3ULJ3 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Upf3aQ3ULJ3 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Upf3aQ3ULJ3 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC23.32■■□□□ 1.32
Upf3aQ3ULJ3 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Upf3aQ3ULJ3 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC23.32■■□□□ 1.32
Upf3aQ3ULJ3 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
Upf3aQ3ULJ3 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Upf3aQ3ULJ3 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Upf3aQ3ULJ3 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC23.31■■□□□ 1.32
Upf3aQ3ULJ3 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC23.31■■□□□ 1.32
Upf3aQ3ULJ3 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Upf3aQ3ULJ3 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC23.31■■□□□ 1.32
Upf3aQ3ULJ3 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
Upf3aQ3ULJ3 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC23.3■■□□□ 1.32
Upf3aQ3ULJ3 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC23.3■■□□□ 1.32
Upf3aQ3ULJ3 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Upf3aQ3ULJ3 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC23.3■■□□□ 1.32
Upf3aQ3ULJ3 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC23.3■■□□□ 1.32
Upf3aQ3ULJ3 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Upf3aQ3ULJ3 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Upf3aQ3ULJ3 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC23.29■■□□□ 1.32
Upf3aQ3ULJ3 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Upf3aQ3ULJ3 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Upf3aQ3ULJ3 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC23.29■■□□□ 1.32
Upf3aQ3ULJ3 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Upf3aQ3ULJ3 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Upf3aQ3ULJ3 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Upf3aQ3ULJ3 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Upf3aQ3ULJ3 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Upf3aQ3ULJ3 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Upf3aQ3ULJ3 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
Upf3aQ3ULJ3 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
Upf3aQ3ULJ3 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Upf3aQ3ULJ3 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC23.26■■□□□ 1.31
Upf3aQ3ULJ3 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Upf3aQ3ULJ3 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Upf3aQ3ULJ3 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC23.26■■□□□ 1.31
Upf3aQ3ULJ3 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Upf3aQ3ULJ3 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
Upf3aQ3ULJ3 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Upf3aQ3ULJ3 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Upf3aQ3ULJ3 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
Upf3aQ3ULJ3 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Upf3aQ3ULJ3 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Upf3aQ3ULJ3 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC23.25■■□□□ 1.31
Upf3aQ3ULJ3 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Upf3aQ3ULJ3 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Upf3aQ3ULJ3 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Upf3aQ3ULJ3 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Upf3aQ3ULJ3 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Upf3aQ3ULJ3 AC153524.1-201ENSMUST00000220436 1935 ntBASIC23.24■■□□□ 1.31
Upf3aQ3ULJ3 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC23.24■■□□□ 1.31
Upf3aQ3ULJ3 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC23.24■■□□□ 1.31
Upf3aQ3ULJ3 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Upf3aQ3ULJ3 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Upf3aQ3ULJ3 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
Upf3aQ3ULJ3 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Upf3aQ3ULJ3 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC23.23■■□□□ 1.31
Upf3aQ3ULJ3 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC23.23■■□□□ 1.31
Upf3aQ3ULJ3 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC23.22■■□□□ 1.31
Upf3aQ3ULJ3 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Upf3aQ3ULJ3 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC23.22■■□□□ 1.31
Upf3aQ3ULJ3 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Upf3aQ3ULJ3 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC23.22■■□□□ 1.31
Upf3aQ3ULJ3 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Upf3aQ3ULJ3 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
Upf3aQ3ULJ3 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Upf3aQ3ULJ3 Gm7417-201ENSMUST00000192950 473 ntBASIC23.21■■□□□ 1.31
Upf3aQ3ULJ3 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC23.21■■□□□ 1.31
Upf3aQ3ULJ3 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Upf3aQ3ULJ3 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Upf3aQ3ULJ3 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC23.21■■□□□ 1.31
Upf3aQ3ULJ3 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Upf3aQ3ULJ3 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Upf3aQ3ULJ3 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Upf3aQ3ULJ3 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Upf3aQ3ULJ3 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Upf3aQ3ULJ3 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Upf3aQ3ULJ3 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Upf3aQ3ULJ3 Gm28536-201ENSMUST00000190971 1317 ntBASIC23.19■■□□□ 1.3
Upf3aQ3ULJ3 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC23.19■■□□□ 1.3
Upf3aQ3ULJ3 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Upf3aQ3ULJ3 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms