Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Msh6P54276 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Msh6P54276 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Msh6P54276 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.14
Msh6P54276 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC28.39■■■□□ 2.14
Msh6P54276 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
Msh6P54276 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Msh6P54276 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Msh6P54276 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC28.37■■■□□ 2.13
Msh6P54276 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC28.37■■■□□ 2.13
Msh6P54276 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Msh6P54276 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Msh6P54276 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Msh6P54276 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC28.37■■■□□ 2.13
Msh6P54276 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
Msh6P54276 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Msh6P54276 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Msh6P54276 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Msh6P54276 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC28.36■■■□□ 2.13
Msh6P54276 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Msh6P54276 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
Msh6P54276 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC28.34■■■□□ 2.13
Msh6P54276 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC28.34■■■□□ 2.13
Msh6P54276 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC28.34■■■□□ 2.13
Msh6P54276 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Msh6P54276 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Msh6P54276 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Msh6P54276 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Msh6P54276 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Msh6P54276 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Msh6P54276 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC28.33■■■□□ 2.13
Msh6P54276 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Msh6P54276 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.12
Msh6P54276 Gm10232-201ENSMUST00000089221 720 ntBASIC28.32■■■□□ 2.12
Msh6P54276 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
Msh6P54276 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
Msh6P54276 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Msh6P54276 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Msh6P54276 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
Msh6P54276 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Msh6P54276 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Msh6P54276 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Msh6P54276 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Msh6P54276 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC28.29■■■□□ 2.12
Msh6P54276 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC28.29■■■□□ 2.12
Msh6P54276 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC28.29■■■□□ 2.12
Msh6P54276 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Msh6P54276 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC28.28■■■□□ 2.12
Msh6P54276 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Msh6P54276 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Msh6P54276 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC28.28■■■□□ 2.12
Msh6P54276 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Msh6P54276 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Msh6P54276 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC28.27■■■□□ 2.12
Msh6P54276 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Msh6P54276 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
Msh6P54276 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC28.26■■■□□ 2.12
Msh6P54276 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC28.26■■■□□ 2.12
Msh6P54276 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC28.26■■■□□ 2.11
Msh6P54276 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Msh6P54276 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Msh6P54276 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
Msh6P54276 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Msh6P54276 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC28.24■■■□□ 2.11
Msh6P54276 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
Msh6P54276 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Msh6P54276 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
Msh6P54276 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Msh6P54276 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Msh6P54276 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC28.23■■■□□ 2.11
Msh6P54276 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Msh6P54276 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Msh6P54276 Etf1-202ENSMUST00000180351 108 ntBASIC28.22■■■□□ 2.11
Msh6P54276 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Msh6P54276 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Msh6P54276 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Msh6P54276 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC28.2■■■□□ 2.1
Msh6P54276 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Msh6P54276 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC28.2■■■□□ 2.1
Msh6P54276 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Msh6P54276 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
Msh6P54276 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC28.19■■■□□ 2.1
Msh6P54276 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Msh6P54276 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC28.19■■■□□ 2.1
Msh6P54276 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
Msh6P54276 Gm5131-201ENSMUST00000212776 1238 ntBASIC28.18■■■□□ 2.1
Msh6P54276 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Msh6P54276 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
Msh6P54276 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Msh6P54276 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC28.17■■■□□ 2.1
Msh6P54276 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
Msh6P54276 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Msh6P54276 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC28.17■■■□□ 2.1
Msh6P54276 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Msh6P54276 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
Msh6P54276 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Msh6P54276 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Msh6P54276 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
Msh6P54276 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
Msh6P54276 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
Retrieved 100 of 76,532 protein–RNA pairs in 9.1 ms