Protein–RNA interactions for Protein: P29595

Nedd8, NEDD8, mousemouse

Predictions only

Length 81 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nedd8P29595 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Nedd8P29595 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Nedd8P29595 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nedd8P29595 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nedd8P29595 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.32■□□□□ 0.84
Nedd8P29595 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Nedd8P29595 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.31■□□□□ 0.84
Nedd8P29595 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nedd8P29595 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nedd8P29595 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Nedd8P29595 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nedd8P29595 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.31■□□□□ 0.84
Nedd8P29595 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nedd8P29595 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.3■□□□□ 0.84
Nedd8P29595 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nedd8P29595 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nedd8P29595 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC20.3■□□□□ 0.84
Nedd8P29595 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.3■□□□□ 0.84
Nedd8P29595 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.29■□□□□ 0.84
Nedd8P29595 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Nedd8P29595 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nedd8P29595 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nedd8P29595 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nedd8P29595 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Nedd8P29595 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nedd8P29595 Hsf1-207ENSMUST00000228371 2102 ntBASIC20.27■□□□□ 0.84
Nedd8P29595 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nedd8P29595 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Nedd8P29595 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nedd8P29595 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nedd8P29595 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Nedd8P29595 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Nedd8P29595 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Nedd8P29595 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Nedd8P29595 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Nedd8P29595 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Nedd8P29595 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nedd8P29595 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC20.26■□□□□ 0.83
Nedd8P29595 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Nedd8P29595 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nedd8P29595 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nedd8P29595 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nedd8P29595 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nedd8P29595 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Nedd8P29595 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nedd8P29595 AC153962.1-201ENSMUST00000218530 1948 ntBASIC20.24■□□□□ 0.83
Nedd8P29595 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.24■□□□□ 0.83
Nedd8P29595 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Nedd8P29595 AC157572.2-201ENSMUST00000226970 908 ntBASIC20.24■□□□□ 0.83
Nedd8P29595 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nedd8P29595 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nedd8P29595 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nedd8P29595 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nedd8P29595 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nedd8P29595 Gm43863-201ENSMUST00000203822 1192 ntBASIC20.23■□□□□ 0.83
Nedd8P29595 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Nedd8P29595 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Nedd8P29595 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nedd8P29595 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nedd8P29595 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Nedd8P29595 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Nedd8P29595 Gm37415-201ENSMUST00000192265 2054 ntBASIC20.22■□□□□ 0.83
Nedd8P29595 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Nedd8P29595 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Nedd8P29595 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Nedd8P29595 Gm8109-201ENSMUST00000194076 746 ntBASIC20.21■□□□□ 0.83
Nedd8P29595 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.21■□□□□ 0.83
Nedd8P29595 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
Nedd8P29595 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nedd8P29595 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nedd8P29595 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.2■□□□□ 0.82
Nedd8P29595 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Nedd8P29595 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nedd8P29595 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nedd8P29595 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.18■□□□□ 0.82
Nedd8P29595 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Nedd8P29595 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC20.18■□□□□ 0.82
Nedd8P29595 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.18■□□□□ 0.82
Nedd8P29595 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nedd8P29595 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nedd8P29595 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nedd8P29595 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nedd8P29595 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nedd8P29595 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nedd8P29595 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Nedd8P29595 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nedd8P29595 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Nedd8P29595 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Nedd8P29595 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Nedd8P29595 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Nedd8P29595 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nedd8P29595 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nedd8P29595 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Nedd8P29595 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Nedd8P29595 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nedd8P29595 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nedd8P29595 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
Nedd8P29595 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nedd8P29595 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nedd8P29595 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms