Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Chd6A3KFM7 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC18.5■□□□□ 0.55
Chd6A3KFM7 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chd6A3KFM7 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chd6A3KFM7 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Chd6A3KFM7 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Chd6A3KFM7 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Chd6A3KFM7 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chd6A3KFM7 Spcs1-204ENSMUST00000226782 949 ntBASIC18.49■□□□□ 0.55
Chd6A3KFM7 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chd6A3KFM7 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chd6A3KFM7 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chd6A3KFM7 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Chd6A3KFM7 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chd6A3KFM7 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
Chd6A3KFM7 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Chd6A3KFM7 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Chd6A3KFM7 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Chd6A3KFM7 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC18.48■□□□□ 0.55
Chd6A3KFM7 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Chd6A3KFM7 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chd6A3KFM7 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC18.47■□□□□ 0.55
Chd6A3KFM7 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC18.47■□□□□ 0.55
Chd6A3KFM7 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC18.46■□□□□ 0.55
Chd6A3KFM7 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Chd6A3KFM7 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC18.46■□□□□ 0.55
Chd6A3KFM7 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Chd6A3KFM7 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Chd6A3KFM7 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Chd6A3KFM7 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Chd6A3KFM7 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chd6A3KFM7 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC18.45■□□□□ 0.54
Chd6A3KFM7 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chd6A3KFM7 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC18.45■□□□□ 0.54
Chd6A3KFM7 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC18.45■□□□□ 0.54
Chd6A3KFM7 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chd6A3KFM7 Gm22325-201ENSMUST00000158904 308 ntBASIC18.44■□□□□ 0.54
Chd6A3KFM7 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chd6A3KFM7 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Chd6A3KFM7 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC18.44■□□□□ 0.54
Chd6A3KFM7 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chd6A3KFM7 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chd6A3KFM7 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chd6A3KFM7 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Chd6A3KFM7 AC117769.4-201ENSMUST00000225679 685 ntBASIC18.43■□□□□ 0.54
Chd6A3KFM7 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chd6A3KFM7 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC18.43■□□□□ 0.54
Chd6A3KFM7 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.43■□□□□ 0.54
Chd6A3KFM7 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chd6A3KFM7 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC18.43■□□□□ 0.54
Chd6A3KFM7 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC18.43■□□□□ 0.54
Chd6A3KFM7 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.43■□□□□ 0.54
Chd6A3KFM7 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chd6A3KFM7 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chd6A3KFM7 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Chd6A3KFM7 Gm21168-201ENSMUST00000199646 1096 ntBASIC18.42■□□□□ 0.54
Chd6A3KFM7 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC18.42■□□□□ 0.54
Chd6A3KFM7 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chd6A3KFM7 Gm10849-201ENSMUST00000100397 618 ntBASIC18.42■□□□□ 0.54
Chd6A3KFM7 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chd6A3KFM7 Gm40881-201ENSMUST00000223397 166 ntBASIC18.42■□□□□ 0.54
Chd6A3KFM7 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd6A3KFM7 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Chd6A3KFM7 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.41■□□□□ 0.54
Chd6A3KFM7 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC18.41■□□□□ 0.54
Chd6A3KFM7 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.41■□□□□ 0.54
Chd6A3KFM7 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd6A3KFM7 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd6A3KFM7 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd6A3KFM7 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd6A3KFM7 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd6A3KFM7 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd6A3KFM7 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Chd6A3KFM7 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Chd6A3KFM7 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd6A3KFM7 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd6A3KFM7 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd6A3KFM7 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Chd6A3KFM7 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC18.4■□□□□ 0.54
Chd6A3KFM7 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd6A3KFM7 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd6A3KFM7 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd6A3KFM7 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Chd6A3KFM7 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd6A3KFM7 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Chd6A3KFM7 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC18.38■□□□□ 0.53
Chd6A3KFM7 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC18.38■□□□□ 0.53
Chd6A3KFM7 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Chd6A3KFM7 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC18.38■□□□□ 0.53
Chd6A3KFM7 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Chd6A3KFM7 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd6A3KFM7 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Chd6A3KFM7 Gm27405-201ENSMUST00000184201 112 ntBASIC18.37■□□□□ 0.53
Chd6A3KFM7 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chd6A3KFM7 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chd6A3KFM7 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
Chd6A3KFM7 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chd6A3KFM7 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Chd6A3KFM7 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Chd6A3KFM7 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 14.8 ms