Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
Smc1aQ9CU62 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 Gm38197-201ENSMUST00000192320 2122 ntBASIC16■□□□□ 0.15
Smc1aQ9CU62 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 Gm25287-201ENSMUST00000103846 110 ntBASIC16■□□□□ 0.15
Smc1aQ9CU62 Gm22918-201ENSMUST00000103855 110 ntBASIC16■□□□□ 0.15
Smc1aQ9CU62 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC16■□□□□ 0.15
Smc1aQ9CU62 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC16■□□□□ 0.15
Smc1aQ9CU62 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC16■□□□□ 0.15
Smc1aQ9CU62 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Smc1aQ9CU62 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Smc1aQ9CU62 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC16■□□□□ 0.15
Smc1aQ9CU62 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC16■□□□□ 0.15
Smc1aQ9CU62 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Smc1aQ9CU62 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC16■□□□□ 0.15
Smc1aQ9CU62 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Smc1aQ9CU62 Gm28182-201ENSMUST00000188354 2477 ntBASIC16■□□□□ 0.15
Smc1aQ9CU62 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 AC166491.1-201ENSMUST00000227053 2308 ntBASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Gm27622-201ENSMUST00000183779 60 ntBASIC15.99■□□□□ 0.15
Smc1aQ9CU62 AC126408.1-201ENSMUST00000225184 523 ntBASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Smc1aQ9CU62 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 AC154767.3-201ENSMUST00000225150 1342 ntBASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 CT030684.1-201ENSMUST00000227292 914 ntBASIC15.98■□□□□ 0.15
Smc1aQ9CU62 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Smc1aQ9CU62 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Smc1aQ9CU62 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Smc1aQ9CU62 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Smc1aQ9CU62 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC15.97■□□□□ 0.15
Smc1aQ9CU62 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 58.4 ms