Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Gm14042-201ENSMUST00000120139 833 ntBASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim40Q3UWA4 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.27
Trim40Q3UWA4 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
Trim40Q3UWA4 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
Trim40Q3UWA4 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Gm11185-201ENSMUST00000117732 1007 ntBASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Trim40Q3UWA4 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 AC130669.1-201ENSMUST00000228537 1672 ntBASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Ankra2-208ENSMUST00000226100 1476 ntBASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Gm2308-201ENSMUST00000166539 1004 ntBASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Gm18489-201ENSMUST00000172565 551 ntBASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Trim40Q3UWA4 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms