Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC13.88□□□□□ -0.19
Col28a1Q2UY11 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Gm2420-202ENSMUST00000202224 2249 ntBASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col28a1Q2UY11 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Gm14042-201ENSMUST00000120139 833 ntBASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col28a1Q2UY11 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Col28a1Q2UY11 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC13.85□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 61.2 ms