Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Col8a1Q00780 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Gm8399-201ENSMUST00000082300 1117 ntBASIC12.17□□□□□ -0.46
Col8a1Q00780 Mir125a-201ENSMUST00000083545 68 ntBASIC12.17□□□□□ -0.46
Col8a1Q00780 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Col8a1Q00780 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC12.17□□□□□ -0.46
Col8a1Q00780 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC12.17□□□□□ -0.46
Col8a1Q00780 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC12.16□□□□□ -0.46
Col8a1Q00780 AC166574.6-201ENSMUST00000227889 1806 ntBASIC12.16□□□□□ -0.46
Col8a1Q00780 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Col8a1Q00780 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Col8a1Q00780 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Col8a1Q00780 Gm5354-201ENSMUST00000182417 973 ntBASIC12.16□□□□□ -0.46
Col8a1Q00780 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 AA619741-201ENSMUST00000195095 646 ntBASIC12.16□□□□□ -0.46
Col8a1Q00780 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Col8a1Q00780 CT009713.10-202ENSMUST00000225734 696 ntBASIC12.16□□□□□ -0.46
Col8a1Q00780 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC12.16□□□□□ -0.46
Col8a1Q00780 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
Col8a1Q00780 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
Col8a1Q00780 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Col8a1Q00780 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col8a1Q00780 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Col8a1Q00780 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Col8a1Q00780 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Col8a1Q00780 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col8a1Q00780 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col8a1Q00780 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col8a1Q00780 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Col8a1Q00780 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col8a1Q00780 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.46
Col8a1Q00780 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col8a1Q00780 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col8a1Q00780 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col8a1Q00780 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col8a1Q00780 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC12.15□□□□□ -0.46
Col8a1Q00780 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col8a1Q00780 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC12.15□□□□□ -0.46
Col8a1Q00780 Gm27572-201ENSMUST00000183702 255 ntBASIC12.15□□□□□ -0.46
Col8a1Q00780 Gm45784-201ENSMUST00000188360 142 ntBASIC12.15□□□□□ -0.46
Col8a1Q00780 Gm4959-201ENSMUST00000197271 1044 ntBASIC12.15□□□□□ -0.46
Col8a1Q00780 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Col8a1Q00780 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col8a1Q00780 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col8a1Q00780 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col8a1Q00780 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col8a1Q00780 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col8a1Q00780 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.47
Col8a1Q00780 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.47
Col8a1Q00780 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
Col8a1Q00780 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 AC154527.2-201ENSMUST00000225256 1466 ntBASIC12.14□□□□□ -0.47
Col8a1Q00780 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
Col8a1Q00780 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC12.14□□□□□ -0.47
Col8a1Q00780 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Col8a1Q00780 Mir7654-201ENSMUST00000185082 70 ntBASIC12.14□□□□□ -0.47
Col8a1Q00780 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC12.14□□□□□ -0.47
Col8a1Q00780 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC12.14□□□□□ -0.47
Col8a1Q00780 Gm9728-201ENSMUST00000200197 1055 ntBASIC12.14□□□□□ -0.47
Col8a1Q00780 Gm6916-202ENSMUST00000205523 195 ntBASIC12.14□□□□□ -0.47
Col8a1Q00780 AC156016.3-201ENSMUST00000228623 344 ntBASIC12.14□□□□□ -0.47
Col8a1Q00780 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col8a1Q00780 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms