Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col18a1P39061 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col18a1P39061 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Col18a1P39061 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col18a1P39061 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Col18a1P39061 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC18.55■□□□□ 0.56
Col18a1P39061 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.55■□□□□ 0.56
Col18a1P39061 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Col18a1P39061 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC18.55■□□□□ 0.56
Col18a1P39061 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col18a1P39061 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col18a1P39061 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col18a1P39061 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col18a1P39061 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Col18a1P39061 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col18a1P39061 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col18a1P39061 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col18a1P39061 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col18a1P39061 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col18a1P39061 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col18a1P39061 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC18.54■□□□□ 0.56
Col18a1P39061 Gm45630-201ENSMUST00000210243 1911 ntBASIC18.54■□□□□ 0.56
Col18a1P39061 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col18a1P39061 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC18.54■□□□□ 0.56
Col18a1P39061 Gm12201-201ENSMUST00000120657 1234 ntBASIC18.54■□□□□ 0.56
Col18a1P39061 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC18.54■□□□□ 0.56
Col18a1P39061 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col18a1P39061 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col18a1P39061 Gm2445-201ENSMUST00000182798 989 ntBASIC18.54■□□□□ 0.56
Col18a1P39061 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC18.54■□□□□ 0.56
Col18a1P39061 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC18.54■□□□□ 0.56
Col18a1P39061 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col18a1P39061 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col18a1P39061 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col18a1P39061 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col18a1P39061 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
Col18a1P39061 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col18a1P39061 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.53■□□□□ 0.56
Col18a1P39061 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC18.53■□□□□ 0.56
Col18a1P39061 Gm14208-201ENSMUST00000119645 678 ntBASIC18.53■□□□□ 0.56
Col18a1P39061 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
Col18a1P39061 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC18.53■□□□□ 0.56
Col18a1P39061 AC131690.1-201ENSMUST00000218406 374 ntBASIC18.53■□□□□ 0.56
Col18a1P39061 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC18.53■□□□□ 0.56
Col18a1P39061 AC131997.1-201ENSMUST00000228611 1229 ntBASIC18.53■□□□□ 0.56
Col18a1P39061 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Col18a1P39061 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Col18a1P39061 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC18.53■□□□□ 0.56
Col18a1P39061 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC18.53■□□□□ 0.56
Col18a1P39061 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Gm5523-201ENSMUST00000180415 997 ntBASIC18.53■□□□□ 0.56
Col18a1P39061 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 CT025533.2-201ENSMUST00000228715 1248 ntBASIC18.53■□□□□ 0.56
Col18a1P39061 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col18a1P39061 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Col18a1P39061 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col18a1P39061 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col18a1P39061 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col18a1P39061 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC18.52■□□□□ 0.56
Col18a1P39061 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col18a1P39061 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col18a1P39061 AC093043.3-201ENSMUST00000226531 2273 ntBASIC18.52■□□□□ 0.56
Col18a1P39061 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col18a1P39061 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC18.52■□□□□ 0.56
Col18a1P39061 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col18a1P39061 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col18a1P39061 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col18a1P39061 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC18.52■□□□□ 0.55
Col18a1P39061 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC18.52■□□□□ 0.55
Col18a1P39061 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC18.52■□□□□ 0.55
Col18a1P39061 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col18a1P39061 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
Col18a1P39061 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col18a1P39061 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.55
Col18a1P39061 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col18a1P39061 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC18.52■□□□□ 0.55
Col18a1P39061 Gm6159-201ENSMUST00000191249 1724 ntBASIC18.51■□□□□ 0.55
Col18a1P39061 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC18.51■□□□□ 0.55
Col18a1P39061 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC18.51■□□□□ 0.55
Col18a1P39061 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col18a1P39061 Gm14130-201ENSMUST00000118417 987 ntBASIC18.51■□□□□ 0.55
Col18a1P39061 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC18.51■□□□□ 0.55
Col18a1P39061 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC18.51■□□□□ 0.55
Col18a1P39061 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
Col18a1P39061 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms