Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC11.15□□□□□ -0.62
Hoxd3P09027 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Gm12151-201ENSMUST00000121374 290 ntBASIC11.15□□□□□ -0.62
Hoxd3P09027 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC11.15□□□□□ -0.62
Hoxd3P09027 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC11.15□□□□□ -0.62
Hoxd3P09027 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC11.15□□□□□ -0.62
Hoxd3P09027 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
Hoxd3P09027 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Gm27306-201ENSMUST00000183970 107 ntBASIC11.15□□□□□ -0.62
Hoxd3P09027 Mir8102-201ENSMUST00000184148 139 ntBASIC11.15□□□□□ -0.62
Hoxd3P09027 Gm27989-201ENSMUST00000184721 107 ntBASIC11.15□□□□□ -0.62
Hoxd3P09027 Gm38216-201ENSMUST00000194872 1214 ntBASIC11.15□□□□□ -0.62
Hoxd3P09027 Gm44344-201ENSMUST00000200287 129 ntBASIC11.15□□□□□ -0.62
Hoxd3P09027 B230112I24Rik-201ENSMUST00000203953 1229 ntBASIC11.15□□□□□ -0.62
Hoxd3P09027 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 AC124751.1-201ENSMUST00000222716 1408 ntBASIC11.15□□□□□ -0.62
Hoxd3P09027 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
Hoxd3P09027 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Hoxd3P09027 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Hoxd3P09027 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.63
Hoxd3P09027 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Hoxd3P09027 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Hoxd3P09027 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Hoxd3P09027 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Hoxd3P09027 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Hoxd3P09027 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Hoxd3P09027 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Gm28877-201ENSMUST00000191349 604 ntBASIC11.14□□□□□ -0.63
Hoxd3P09027 Gm19080-201ENSMUST00000196082 550 ntBASIC11.14□□□□□ -0.63
Hoxd3P09027 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC11.14□□□□□ -0.63
Hoxd3P09027 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hoxd3P09027 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Hoxd3P09027 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hoxd3P09027 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hoxd3P09027 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hoxd3P09027 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hoxd3P09027 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Hoxd3P09027 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hoxd3P09027 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Hoxd3P09027 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Hoxd3P09027 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms