Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Cbx4O55187 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC13.99□□□□□ -0.17
Cbx4O55187 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Cbx4O55187 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Cbx4O55187 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC13.98□□□□□ -0.17
Cbx4O55187 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC13.98□□□□□ -0.17
Cbx4O55187 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC13.98□□□□□ -0.17
Cbx4O55187 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC13.98□□□□□ -0.17
Cbx4O55187 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
Cbx4O55187 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC13.98□□□□□ -0.17
Cbx4O55187 AC131710.1-201ENSMUST00000228336 990 ntBASIC13.98□□□□□ -0.17
Cbx4O55187 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC13.98□□□□□ -0.17
Cbx4O55187 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Gm5763-201ENSMUST00000155951 1530 ntBASIC13.98□□□□□ -0.17
Cbx4O55187 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Cbx4O55187 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Cbx4O55187 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC13.98□□□□□ -0.17
Cbx4O55187 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Cbx4O55187 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cbx4O55187 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC13.97□□□□□ -0.17
Cbx4O55187 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Cbx4O55187 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Gm37411-201ENSMUST00000194180 2282 ntBASIC13.97□□□□□ -0.17
Cbx4O55187 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC13.97□□□□□ -0.17
Cbx4O55187 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC13.97□□□□□ -0.17
Cbx4O55187 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC13.97□□□□□ -0.17
Cbx4O55187 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC13.97□□□□□ -0.17
Cbx4O55187 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC13.97□□□□□ -0.17
Cbx4O55187 Mir6990-201ENSMUST00000183724 91 ntBASIC13.97□□□□□ -0.17
Cbx4O55187 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC13.97□□□□□ -0.17
Cbx4O55187 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC13.97□□□□□ -0.17
Cbx4O55187 Chchd1-203ENSMUST00000224633 557 ntBASIC13.97□□□□□ -0.17
Cbx4O55187 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC13.97□□□□□ -0.17
Cbx4O55187 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cbx4O55187 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 52.1 ms