Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Prpf40aQ9R1C7 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Gm14451-201ENSMUST00000121581 1542 ntBASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Mir6990-201ENSMUST00000183724 91 ntBASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Gm38225-201ENSMUST00000194001 393 ntBASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Gm43575-201ENSMUST00000196420 516 ntBASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC15.74■□□□□ 0.11
Prpf40aQ9R1C7 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Gm44291-201ENSMUST00000203102 2865 ntBASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Gm23935-201ENSMUST00000102303 57 ntBASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Gm24270-201ENSMUST00000102326 57 ntBASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Gm25287-201ENSMUST00000103846 110 ntBASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Gm22918-201ENSMUST00000103855 110 ntBASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Gm24245-201ENSMUST00000157318 57 ntBASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 AC131710.1-201ENSMUST00000228336 990 ntBASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms