Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Scn4aQ9ER60 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Scn4aQ9ER60 Abhd6-203ENSMUST00000225234 1958 ntBASIC19.07■□□□□ 0.64
Scn4aQ9ER60 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Scn4aQ9ER60 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Scn4aQ9ER60 Gm19459-201ENSMUST00000176240 835 ntBASIC19.07■□□□□ 0.64
Scn4aQ9ER60 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Scn4aQ9ER60 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Scn4aQ9ER60 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC19.07■□□□□ 0.64
Scn4aQ9ER60 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Gm10434-201ENSMUST00000101158 471 ntBASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 CT025694.1-201ENSMUST00000226188 934 ntBASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Scn4aQ9ER60 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Gm29741-201ENSMUST00000192667 421 ntBASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn4aQ9ER60 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Gm8885-201ENSMUST00000189382 598 ntBASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Gm45224-201ENSMUST00000208203 414 ntBASIC19.04■□□□□ 0.64
Scn4aQ9ER60 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Gm7600-201ENSMUST00000209657 785 ntBASIC19.04■□□□□ 0.64
Scn4aQ9ER60 AC125486.1-201ENSMUST00000218701 320 ntBASIC19.04■□□□□ 0.64
Scn4aQ9ER60 AC154276.3-201ENSMUST00000227643 998 ntBASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scn4aQ9ER60 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Gm13886-201ENSMUST00000117876 1183 ntBASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Gm44136-201ENSMUST00000203819 1106 ntBASIC19.03■□□□□ 0.64
Scn4aQ9ER60 AC132901.1-201ENSMUST00000224345 508 ntBASIC19.03■□□□□ 0.64
Scn4aQ9ER60 AC154222.2-201ENSMUST00000225848 607 ntBASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Gm44775-201ENSMUST00000207266 1456 ntBASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Scn4aQ9ER60 Crry-ps-201ENSMUST00000079090 1309 ntBASIC19.03■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms