Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm37411-201ENSMUST00000194180 2282 ntBASIC15.05■□□□□ 0
Ddx56Q9D0R4 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC15.05■□□□□ 0
Ddx56Q9D0R4 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ddx56Q9D0R4 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ddx56Q9D0R4 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ddx56Q9D0R4 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ddx56Q9D0R4 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC15.05■□□□□ 0
Ddx56Q9D0R4 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Gm6539-201ENSMUST00000119157 1064 ntBASIC15.05■□□□□ -0
Ddx56Q9D0R4 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC15.05■□□□□ -0
Ddx56Q9D0R4 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Ddx56Q9D0R4 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC15.05■□□□□ -0
Ddx56Q9D0R4 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Ddx56Q9D0R4 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Gm38042-201ENSMUST00000191614 5208 ntBASIC15.04■□□□□ -0
Ddx56Q9D0R4 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Ddx56Q9D0R4 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Gm12882-201ENSMUST00000121696 517 ntBASIC15.04■□□□□ -0
Ddx56Q9D0R4 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
Ddx56Q9D0R4 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Gm18049-201ENSMUST00000208909 581 ntBASIC15.04■□□□□ -0
Ddx56Q9D0R4 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC15.04■□□□□ -0
Ddx56Q9D0R4 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
Ddx56Q9D0R4 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Gm13015-201ENSMUST00000118674 204 ntBASIC15.03■□□□□ -0
Ddx56Q9D0R4 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
Ddx56Q9D0R4 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Gm9824-201ENSMUST00000178707 561 ntBASIC15.03■□□□□ -0
Ddx56Q9D0R4 Gm43474-201ENSMUST00000196415 774 ntBASIC15.03■□□□□ -0
Ddx56Q9D0R4 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Ddx56Q9D0R4 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC15.03■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms