Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Gm15427-201ENSMUST00000117288 531 ntBASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Gm1401-201ENSMUST00000122048 772 ntBASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 AC123645.1-201ENSMUST00000228469 605 ntBASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lsm1Q8VC85 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Gm6973-201ENSMUST00000117080 721 ntBASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Gm6226-201ENSMUST00000117765 1146 ntBASIC13.71□□□□□ -0.21
Lsm1Q8VC85 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Gm5364-201ENSMUST00000216789 889 ntBASIC13.71□□□□□ -0.21
Lsm1Q8VC85 AC174742.1-201ENSMUST00000218272 304 ntBASIC13.71□□□□□ -0.21
Lsm1Q8VC85 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lsm1Q8VC85 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lsm1Q8VC85 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Lsm1Q8VC85 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Lsm1Q8VC85 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Lsm1Q8VC85 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Lsm1Q8VC85 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC13.71□□□□□ -0.22
Lsm1Q8VC85 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Gm43332-201ENSMUST00000202511 1044 ntBASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Gm20553-201ENSMUST00000204205 844 ntBASIC13.7□□□□□ -0.22
Lsm1Q8VC85 AC131187.1-201ENSMUST00000224567 809 ntBASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lsm1Q8VC85 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lsm1Q8VC85 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lsm1Q8VC85 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Lsm1Q8VC85 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms