Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Mir3113-201ENSMUST00000175478 76 ntBASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Gm44771-201ENSMUST00000206975 626 ntBASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc40Q8BI79 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Gm43205-201ENSMUST00000198622 1968 ntBASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Gm23547-201ENSMUST00000158210 271 ntBASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Gm44492-201ENSMUST00000197012 141 ntBASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Gm43061-201ENSMUST00000198850 2241 ntBASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Carlr-201ENSMUST00000181515 2574 ntBASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ccdc40Q8BI79 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Gm9385-201ENSMUST00000117563 472 ntBASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC14.93□□□□□ -0.02
Ccdc40Q8BI79 Olfr286-202ENSMUST00000205305 969 ntBASIC14.93□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms