Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Mmp14-206ENSMUST00000225641 3238 ntBASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 AC124751.1-201ENSMUST00000222716 1408 ntBASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Gm4875-201ENSMUST00000118257 786 ntBASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Gm6159-201ENSMUST00000191249 1724 ntBASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps54Q5SPW0 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Gm4204-201ENSMUST00000110798 1231 ntBASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Mir8102-201ENSMUST00000184148 139 ntBASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Gm9229-201ENSMUST00000222777 126 ntBASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Nupl1-207ENSMUST00000225311 2475 ntBASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps54Q5SPW0 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Gm14057-201ENSMUST00000120631 482 ntBASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 AC156016.3-201ENSMUST00000228623 344 ntBASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Vps54Q5SPW0 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps54Q5SPW0 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps54Q5SPW0 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps54Q5SPW0 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms