Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Gm45779-201ENSMUST00000212189 4064 ntBASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Gm38577-201ENSMUST00000221531 4545 ntBASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Gm11185-201ENSMUST00000117732 1007 ntBASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Gm8749-201ENSMUST00000117737 331 ntBASIC13.9□□□□□ -0.18
Col28a1Q2UY11 H2af-ps-201ENSMUST00000119066 295 ntBASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Gm2308-201ENSMUST00000166539 1004 ntBASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Gm9726-201ENSMUST00000180321 678 ntBASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 AC174742.1-201ENSMUST00000218272 304 ntBASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
Col28a1Q2UY11 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC13.9□□□□□ -0.19
Col28a1Q2UY11 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Gm11405-201ENSMUST00000118689 1556 ntBASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Gm4913-201ENSMUST00000117075 1290 ntBASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Mir8117-201ENSMUST00000184773 107 ntBASIC13.89□□□□□ -0.19
Col28a1Q2UY11 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC13.89□□□□□ -0.19
Col28a1Q2UY11 AC151836.1-202ENSMUST00000226259 753 ntBASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Gm45630-201ENSMUST00000210243 1911 ntBASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col28a1Q2UY11 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms