Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC13.07□□□□□ -0.32
Cdh11P55288 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdh11P55288 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
Cdh11P55288 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdh11P55288 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdh11P55288 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdh11P55288 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdh11P55288 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Cdh11P55288 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdh11P55288 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdh11P55288 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdh11P55288 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdh11P55288 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC13.07□□□□□ -0.32
Cdh11P55288 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdh11P55288 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC13.06□□□□□ -0.32
Cdh11P55288 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC13.06□□□□□ -0.32
Cdh11P55288 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Cdh11P55288 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
Cdh11P55288 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC13.06□□□□□ -0.32
Cdh11P55288 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC13.06□□□□□ -0.32
Cdh11P55288 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Cdh11P55288 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Cdh11P55288 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
Cdh11P55288 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Cdh11P55288 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Cdh11P55288 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Cdh11P55288 Gm43056-201ENSMUST00000197865 2791 ntBASIC13.06□□□□□ -0.32
Cdh11P55288 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Cdh11P55288 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC13.06□□□□□ -0.32
Cdh11P55288 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Cdh11P55288 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Cdh11P55288 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC13.06□□□□□ -0.32
Cdh11P55288 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdh11P55288 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC13.05□□□□□ -0.32
Cdh11P55288 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Cdh11P55288 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
Cdh11P55288 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Cdh11P55288 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Cdh11P55288 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Cdh11P55288 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Cdh11P55288 Gm5177-201ENSMUST00000183092 997 ntBASIC13.05□□□□□ -0.32
Cdh11P55288 AC124549.3-201ENSMUST00000225541 367 ntBASIC13.05□□□□□ -0.32
Cdh11P55288 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC13.05□□□□□ -0.32
Cdh11P55288 Gm26513-201ENSMUST00000181802 2489 ntBASIC13.05□□□□□ -0.32
Cdh11P55288 AC119177.1-201ENSMUST00000227647 1332 ntBASIC13.05□□□□□ -0.32
Cdh11P55288 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Cdh11P55288 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC13.05□□□□□ -0.32
Cdh11P55288 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdh11P55288 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC13.05□□□□□ -0.32
Cdh11P55288 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Cdh11P55288 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdh11P55288 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Cdh11P55288 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdh11P55288 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdh11P55288 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC13.04□□□□□ -0.32
Cdh11P55288 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdh11P55288 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdh11P55288 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC13.04□□□□□ -0.32
Cdh11P55288 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdh11P55288 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdh11P55288 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdh11P55288 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms