Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cdx2P43241 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC13.53□□□□□ -0.24
Cdx2P43241 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Cdx2P43241 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Cdx2P43241 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Cdx2P43241 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Cdx2P43241 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Cdx2P43241 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC13.53□□□□□ -0.24
Cdx2P43241 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC13.53□□□□□ -0.24
Cdx2P43241 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC13.53□□□□□ -0.24
Cdx2P43241 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC13.53□□□□□ -0.24
Cdx2P43241 Gm27486-201ENSMUST00000184923 80 ntBASIC13.53□□□□□ -0.24
Cdx2P43241 Gm37714-201ENSMUST00000194742 342 ntBASIC13.53□□□□□ -0.24
Cdx2P43241 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Cdx2P43241 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Cdx2P43241 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Gm37305-201ENSMUST00000195714 4279 ntBASIC13.53□□□□□ -0.24
Cdx2P43241 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cdx2P43241 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cdx2P43241 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Cdx2P43241 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cdx2P43241 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cdx2P43241 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cdx2P43241 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cdx2P43241 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cdx2P43241 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
Cdx2P43241 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Cdx2P43241 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cdx2P43241 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cdx2P43241 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Cdx2P43241 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Cdx2P43241 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC13.52□□□□□ -0.25
Cdx2P43241 Gm2495-201ENSMUST00000191160 466 ntBASIC13.52□□□□□ -0.25
Cdx2P43241 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC13.52□□□□□ -0.25
Cdx2P43241 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 AC110817.1-201ENSMUST00000225706 605 ntBASIC13.52□□□□□ -0.25
Cdx2P43241 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Gm9200-201ENSMUST00000118513 1354 ntBASIC13.52□□□□□ -0.25
Cdx2P43241 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC13.52□□□□□ -0.25
Cdx2P43241 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Cdx2P43241 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC13.52□□□□□ -0.25
Cdx2P43241 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC13.52□□□□□ -0.25
Cdx2P43241 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Gm43598-201ENSMUST00000202482 2479 ntBASIC13.52□□□□□ -0.25
Cdx2P43241 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.25
Cdx2P43241 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cdx2P43241 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cdx2P43241 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cdx2P43241 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cdx2P43241 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Cdx2P43241 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cdx2P43241 Gm42632-201ENSMUST00000201707 2411 ntBASIC13.51□□□□□ -0.25
Cdx2P43241 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cdx2P43241 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cdx2P43241 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Cdx2P43241 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cdx2P43241 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Cdx2P43241 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cdx2P43241 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cdx2P43241 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cdx2P43241 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Cdx2P43241 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cdx2P43241 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Cdx2P43241 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms