Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC18.59■□□□□ 0.57
Col18a1P39061 Gm13461-201ENSMUST00000120980 662 ntBASIC18.59■□□□□ 0.57
Col18a1P39061 Gm12363-201ENSMUST00000122250 668 ntBASIC18.59■□□□□ 0.57
Col18a1P39061 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC18.59■□□□□ 0.57
Col18a1P39061 Gm16372-201ENSMUST00000073088 450 ntBASIC18.59■□□□□ 0.57
Col18a1P39061 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col18a1P39061 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col18a1P39061 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col18a1P39061 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col18a1P39061 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col18a1P39061 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col18a1P39061 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col18a1P39061 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col18a1P39061 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col18a1P39061 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col18a1P39061 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col18a1P39061 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
Col18a1P39061 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Col18a1P39061 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Col18a1P39061 Gm5869-201ENSMUST00000200248 1257 ntBASIC18.58■□□□□ 0.57
Col18a1P39061 Gm30285-201ENSMUST00000214614 422 ntBASIC18.58■□□□□ 0.57
Col18a1P39061 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC18.58■□□□□ 0.57
Col18a1P39061 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col18a1P39061 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC18.58■□□□□ 0.57
Col18a1P39061 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col18a1P39061 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col18a1P39061 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col18a1P39061 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col18a1P39061 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col18a1P39061 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col18a1P39061 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
Col18a1P39061 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col18a1P39061 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col18a1P39061 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col18a1P39061 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col18a1P39061 Gm12566-201ENSMUST00000121479 359 ntBASIC18.58■□□□□ 0.56
Col18a1P39061 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Col18a1P39061 Mir6927-201ENSMUST00000184494 71 ntBASIC18.58■□□□□ 0.56
Col18a1P39061 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC18.58■□□□□ 0.56
Col18a1P39061 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
Col18a1P39061 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col18a1P39061 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col18a1P39061 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col18a1P39061 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC18.57■□□□□ 0.56
Col18a1P39061 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC18.57■□□□□ 0.56
Col18a1P39061 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Col18a1P39061 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Gm42632-201ENSMUST00000201707 2411 ntBASIC18.57■□□□□ 0.56
Col18a1P39061 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC18.57■□□□□ 0.56
Col18a1P39061 Gm38317-201ENSMUST00000195564 343 ntBASIC18.57■□□□□ 0.56
Col18a1P39061 Gm14267-206ENSMUST00000226870 1209 ntBASIC18.57■□□□□ 0.56
Col18a1P39061 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col18a1P39061 Prob1-201ENSMUST00000097619 3021 ntBASIC18.57■□□□□ 0.56
Col18a1P39061 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col18a1P39061 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col18a1P39061 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC18.56■□□□□ 0.56
Col18a1P39061 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col18a1P39061 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col18a1P39061 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col18a1P39061 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
Col18a1P39061 Gm11637-201ENSMUST00000120601 592 ntBASIC18.56■□□□□ 0.56
Col18a1P39061 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC18.56■□□□□ 0.56
Col18a1P39061 Gm8959-201ENSMUST00000213150 571 ntBASIC18.56■□□□□ 0.56
Col18a1P39061 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col18a1P39061 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Col18a1P39061 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Col18a1P39061 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col18a1P39061 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col18a1P39061 AC126549.2-201ENSMUST00000223997 1976 ntBASIC18.56■□□□□ 0.56
Col18a1P39061 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col18a1P39061 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Col18a1P39061 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Col18a1P39061 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col18a1P39061 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col18a1P39061 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col18a1P39061 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Col18a1P39061 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
Col18a1P39061 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Col18a1P39061 Gm38144-201ENSMUST00000192790 465 ntBASIC18.55■□□□□ 0.56
Col18a1P39061 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC18.55■□□□□ 0.56
Col18a1P39061 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col18a1P39061 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col18a1P39061 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col18a1P39061 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms