Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Gm7506-201ENSMUST00000207758 815 ntBASIC11.59□□□□□ -0.55
Cdx1P18111 Psmb5-202ENSMUST00000227257 622 ntBASIC11.59□□□□□ -0.55
Cdx1P18111 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC11.59□□□□□ -0.55
Cdx1P18111 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Cdx1P18111 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Cdx1P18111 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC11.59□□□□□ -0.55
Cdx1P18111 Gm32996-201ENSMUST00000199828 1447 ntBASIC11.59□□□□□ -0.55
Cdx1P18111 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC11.59□□□□□ -0.55
Cdx1P18111 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC11.59□□□□□ -0.55
Cdx1P18111 Gm7114-201ENSMUST00000190159 1789 ntBASIC11.59□□□□□ -0.55
Cdx1P18111 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC11.59□□□□□ -0.55
Cdx1P18111 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Cdx1P18111 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC11.59□□□□□ -0.55
Cdx1P18111 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Cdx1P18111 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Cdx1P18111 Grk6-205ENSMUST00000224653 2976 ntBASIC11.58□□□□□ -0.55
Cdx1P18111 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Cdx1P18111 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC11.58□□□□□ -0.56
Cdx1P18111 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
Cdx1P18111 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC11.58□□□□□ -0.56
Cdx1P18111 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC11.58□□□□□ -0.56
Cdx1P18111 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC11.58□□□□□ -0.56
Cdx1P18111 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC11.58□□□□□ -0.56
Cdx1P18111 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC11.58□□□□□ -0.56
Cdx1P18111 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC11.58□□□□□ -0.56
Cdx1P18111 Gm9172-201ENSMUST00000212092 954 ntBASIC11.58□□□□□ -0.56
Cdx1P18111 Gm8655-201ENSMUST00000221159 852 ntBASIC11.58□□□□□ -0.56
Cdx1P18111 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC11.58□□□□□ -0.56
Cdx1P18111 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Cdx1P18111 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
Cdx1P18111 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Cdx1P18111 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx1P18111 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC11.57□□□□□ -0.56
Cdx1P18111 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Cdx1P18111 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC11.57□□□□□ -0.56
Cdx1P18111 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Cdx1P18111 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Cdx1P18111 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC11.57□□□□□ -0.56
Cdx1P18111 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC11.57□□□□□ -0.56
Cdx1P18111 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC11.57□□□□□ -0.56
Cdx1P18111 Gm37584-201ENSMUST00000193595 1290 ntBASIC11.57□□□□□ -0.56
Cdx1P18111 Gm36967-201ENSMUST00000193814 266 ntBASIC11.57□□□□□ -0.56
Cdx1P18111 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC11.57□□□□□ -0.56
Cdx1P18111 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC11.57□□□□□ -0.56
Cdx1P18111 AV026068-213ENSMUST00000223675 1171 ntBASIC11.57□□□□□ -0.56
Cdx1P18111 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Cdx1P18111 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Gm40377-201ENSMUST00000204604 2015 ntBASIC11.57□□□□□ -0.56
Cdx1P18111 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC11.57□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms