Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Gm13365-201ENSMUST00000121188 973 ntBASIC13.5□□□□□ -0.25
Trim3Q9R1R2 CT030684.1-201ENSMUST00000227292 914 ntBASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 AC126250.1-201ENSMUST00000228343 1768 ntBASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Trim3Q9R1R2 AC131743.5-201ENSMUST00000220775 1618 ntBASIC13.5□□□□□ -0.25
Trim3Q9R1R2 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Nupl1-207ENSMUST00000225311 2475 ntBASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Rprl2-201ENSMUST00000157150 290 ntBASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Tcf21-202ENSMUST00000218002 1788 ntBASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim3Q9R1R2 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Trav13-3-201ENSMUST00000117226 336 ntBASIC13.48□□□□□ -0.25
Trim3Q9R1R2 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Trim3Q9R1R2 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Trim3Q9R1R2 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms