Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 AC131709.1-201ENSMUST00000224731 1180 ntBASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Ntrk2-208ENSMUST00000225583 2719 ntBASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Ksr1-207ENSMUST00000226282 5260 ntBASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Trav13-3-201ENSMUST00000117226 336 ntBASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Gm27300-201ENSMUST00000184085 97 ntBASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Gm27335-201ENSMUST00000184758 97 ntBASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 AC138767.1-201ENSMUST00000222661 415 ntBASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lima1Q9ERG0 Gm11873-201ENSMUST00000117877 1304 ntBASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Gm7461-201ENSMUST00000058918 827 ntBASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Gm42928-201ENSMUST00000197338 3339 ntBASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lima1Q9ERG0 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Lima1Q9ERG0 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.15
Lima1Q9ERG0 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Lima1Q9ERG0 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Gm6198-201ENSMUST00000191337 2929 ntBASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms