Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Cdc40Q9DC48 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Gm6944-201ENSMUST00000182449 1006 ntBASIC13.33□□□□□ -0.28
Cdc40Q9DC48 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 AC159621.2-201ENSMUST00000223519 1326 ntBASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cdc40Q9DC48 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Gm9824-201ENSMUST00000178707 561 ntBASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Gm9726-201ENSMUST00000180321 678 ntBASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdc40Q9DC48 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Gm45504-201ENSMUST00000211407 2107 ntBASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Gm13233-201ENSMUST00000118760 1443 ntBASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Gm13244-201ENSMUST00000118855 1446 ntBASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Gm2810-201ENSMUST00000118681 990 ntBASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 AC126408.1-201ENSMUST00000225184 523 ntBASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC13.31□□□□□ -0.28
Cdc40Q9DC48 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms