Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Gm5312-201ENSMUST00000203728 547 ntBASIC13.98□□□□□ -0.17
Msh4Q99MT2 AC131187.1-201ENSMUST00000224567 809 ntBASIC13.98□□□□□ -0.17
Msh4Q99MT2 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Gm44291-201ENSMUST00000203102 2865 ntBASIC13.98□□□□□ -0.17
Msh4Q99MT2 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Gm13233-201ENSMUST00000118760 1443 ntBASIC13.98□□□□□ -0.17
Msh4Q99MT2 Gm13244-201ENSMUST00000118855 1446 ntBASIC13.98□□□□□ -0.17
Msh4Q99MT2 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC13.97□□□□□ -0.17
Msh4Q99MT2 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC13.97□□□□□ -0.17
Msh4Q99MT2 Gm15483-201ENSMUST00000120338 456 ntBASIC13.97□□□□□ -0.17
Msh4Q99MT2 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 AC166341.4-201ENSMUST00000220625 123 ntBASIC13.97□□□□□ -0.17
Msh4Q99MT2 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msh4Q99MT2 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 CT025626.1-201ENSMUST00000223735 1455 ntBASIC13.96□□□□□ -0.17
Msh4Q99MT2 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Gm11543-201ENSMUST00000120758 370 ntBASIC13.96□□□□□ -0.17
Msh4Q99MT2 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC13.96□□□□□ -0.17
Msh4Q99MT2 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC13.96□□□□□ -0.17
Msh4Q99MT2 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Msh4Q99MT2 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC13.96□□□□□ -0.17
Msh4Q99MT2 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msh4Q99MT2 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Msh4Q99MT2 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 76.3 ms