Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdk5rap3Q99LM2 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Cdk5rap3Q99LM2 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdk5rap3Q99LM2 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Cdk5rap3Q99LM2 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Gm26513-201ENSMUST00000181802 2489 ntBASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Gm13410-201ENSMUST00000117058 1415 ntBASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Gm5479-201ENSMUST00000160578 435 ntBASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC14.86□□□□□ -0.03
Cdk5rap3Q99LM2 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Gm9385-201ENSMUST00000117563 472 ntBASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Gm45747-201ENSMUST00000212203 999 ntBASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Mmp14-206ENSMUST00000225641 3238 ntBASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdk5rap3Q99LM2 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 AC102291.3-201ENSMUST00000226566 405 ntBASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdk5rap3Q99LM2 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms