Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp47Q8BY87 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp47Q8BY87 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp47Q8BY87 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Usp47Q8BY87 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp47Q8BY87 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Usp47Q8BY87 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC20.14■□□□□ 0.81
Usp47Q8BY87 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC20.14■□□□□ 0.81
Usp47Q8BY87 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Usp47Q8BY87 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Usp47Q8BY87 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp47Q8BY87 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Usp47Q8BY87 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp47Q8BY87 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC20.13■□□□□ 0.81
Usp47Q8BY87 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 AC126549.2-201ENSMUST00000223997 1976 ntBASIC20.13■□□□□ 0.81
Usp47Q8BY87 Gm14452-201ENSMUST00000118680 1632 ntBASIC20.13■□□□□ 0.81
Usp47Q8BY87 AC159196.2-201ENSMUST00000224082 1622 ntBASIC20.13■□□□□ 0.81
Usp47Q8BY87 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Usp47Q8BY87 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC20.13■□□□□ 0.81
Usp47Q8BY87 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp47Q8BY87 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp47Q8BY87 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Usp47Q8BY87 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Usp47Q8BY87 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Usp47Q8BY87 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp47Q8BY87 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp47Q8BY87 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp47Q8BY87 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp47Q8BY87 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp47Q8BY87 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
Usp47Q8BY87 Gm12859-201ENSMUST00000117834 427 ntBASIC20.12■□□□□ 0.81
Usp47Q8BY87 Gm8584-201ENSMUST00000171982 758 ntBASIC20.12■□□□□ 0.81
Usp47Q8BY87 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Usp47Q8BY87 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Usp47Q8BY87 AL593843.1-201ENSMUST00000195891 145 ntBASIC20.12■□□□□ 0.81
Usp47Q8BY87 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Usp47Q8BY87 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp47Q8BY87 Gm38102-201ENSMUST00000192791 1935 ntBASIC20.12■□□□□ 0.81
Usp47Q8BY87 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Usp47Q8BY87 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Gm15240-201ENSMUST00000118156 720 ntBASIC20.11■□□□□ 0.81
Usp47Q8BY87 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Gm28760-201ENSMUST00000185995 736 ntBASIC20.11■□□□□ 0.81
Usp47Q8BY87 AC135669.1-201ENSMUST00000213585 412 ntBASIC20.11■□□□□ 0.81
Usp47Q8BY87 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Gm9347-201ENSMUST00000211473 1607 ntBASIC20.11■□□□□ 0.81
Usp47Q8BY87 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC20.11■□□□□ 0.81
Usp47Q8BY87 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Usp47Q8BY87 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Usp47Q8BY87 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC20.1■□□□□ 0.81
Usp47Q8BY87 AC139580.1-202ENSMUST00000223574 928 ntBASIC20.1■□□□□ 0.81
Usp47Q8BY87 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Gm42690-201ENSMUST00000197921 1836 ntBASIC20.1■□□□□ 0.81
Usp47Q8BY87 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms