Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Gm7558-201ENSMUST00000193221 1165 ntBASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Cdk7-205ENSMUST00000225990 1159 ntBASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp40Q8BWR4 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Mir7654-201ENSMUST00000185082 70 ntBASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Gm43433-201ENSMUST00000196573 481 ntBASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Usp40Q8BWR4 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Gm5425-201ENSMUST00000214125 459 ntBASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Gm15222-202ENSMUST00000228667 1726 ntBASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp40Q8BWR4 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Ptprs-211ENSMUST00000223859 5588 ntBASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Gm9768-201ENSMUST00000206007 2861 ntBASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Gm8602-201ENSMUST00000184045 607 ntBASIC19.54■□□□□ 0.72
Usp40Q8BWR4 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC19.54■□□□□ 0.72
Usp40Q8BWR4 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Gm6159-201ENSMUST00000191249 1724 ntBASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp40Q8BWR4 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Gm27701-201ENSMUST00000184498 110 ntBASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Gm28911-201ENSMUST00000188837 117 ntBASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 CT030657.3-201ENSMUST00000222707 1200 ntBASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms