Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Ptprs-211ENSMUST00000223859 5588 ntBASIC16.9■□□□□ 0.3
Trim56Q80VI1 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Trim56Q80VI1 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Trim56Q80VI1 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC16.89■□□□□ 0.29
Trim56Q80VI1 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 AC121804.3-201ENSMUST00000223420 295 ntBASIC16.89■□□□□ 0.29
Trim56Q80VI1 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Trim56Q80VI1 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 AC115735.4-201ENSMUST00000227460 1944 ntBASIC16.88■□□□□ 0.29
Trim56Q80VI1 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC16.88■□□□□ 0.29
Trim56Q80VI1 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC16.88■□□□□ 0.29
Trim56Q80VI1 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC16.87■□□□□ 0.29
Trim56Q80VI1 AC156016.3-201ENSMUST00000228623 344 ntBASIC16.87■□□□□ 0.29
Trim56Q80VI1 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC16.87■□□□□ 0.29
Trim56Q80VI1 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms