Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Gm12329-201ENSMUST00000120829 1007 ntBASIC12.22□□□□□ -0.45
Col8a1Q00780 Trav4d-2-201ENSMUST00000120914 335 ntBASIC12.22□□□□□ -0.45
Col8a1Q00780 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Col8a1Q00780 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC12.22□□□□□ -0.45
Col8a1Q00780 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Col8a1Q00780 Gm7067-201ENSMUST00000207698 1249 ntBASIC12.22□□□□□ -0.45
Col8a1Q00780 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Tcf21-202ENSMUST00000218002 1788 ntBASIC12.22□□□□□ -0.45
Col8a1Q00780 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Col8a1Q00780 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Col8a1Q00780 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC12.21□□□□□ -0.45
Col8a1Q00780 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Col8a1Q00780 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Gm42853-201ENSMUST00000201273 1387 ntBASIC12.21□□□□□ -0.45
Col8a1Q00780 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
Col8a1Q00780 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
Col8a1Q00780 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Col8a1Q00780 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC12.21□□□□□ -0.45
Col8a1Q00780 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC12.21□□□□□ -0.45
Col8a1Q00780 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC12.21□□□□□ -0.45
Col8a1Q00780 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
Col8a1Q00780 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC12.21□□□□□ -0.45
Col8a1Q00780 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Col8a1Q00780 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Col8a1Q00780 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col8a1Q00780 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Col8a1Q00780 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Col8a1Q00780 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col8a1Q00780 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Col8a1Q00780 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC12.21□□□□□ -0.46
Col8a1Q00780 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col8a1Q00780 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC12.21□□□□□ -0.46
Col8a1Q00780 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Col8a1Q00780 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col8a1Q00780 Ntrk2-205ENSMUST00000224402 2284 ntBASIC12.21□□□□□ -0.46
Col8a1Q00780 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Col8a1Q00780 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col8a1Q00780 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC12.21□□□□□ -0.46
Col8a1Q00780 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC12.2□□□□□ -0.46
Col8a1Q00780 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Col8a1Q00780 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Col8a1Q00780 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Col8a1Q00780 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Col8a1Q00780 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Col8a1Q00780 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Gm13226-201ENSMUST00000117838 404 ntBASIC12.2□□□□□ -0.46
Col8a1Q00780 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC12.2□□□□□ -0.46
Col8a1Q00780 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC12.2□□□□□ -0.46
Col8a1Q00780 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
Col8a1Q00780 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Col8a1Q00780 Gm37424-201ENSMUST00000191727 561 ntBASIC12.2□□□□□ -0.46
Col8a1Q00780 AC155252.1-201ENSMUST00000226462 1208 ntBASIC12.2□□□□□ -0.46
Col8a1Q00780 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC12.2□□□□□ -0.46
Col8a1Q00780 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms