Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Scn1bP97952 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC13.12□□□□□ -0.31
Scn1bP97952 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC13.12□□□□□ -0.31
Scn1bP97952 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Scn1bP97952 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC13.12□□□□□ -0.31
Scn1bP97952 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 AC158538.2-201ENSMUST00000225455 906 ntBASIC13.12□□□□□ -0.31
Scn1bP97952 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC13.12□□□□□ -0.31
Scn1bP97952 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Scn1bP97952 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Scn1bP97952 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Scn1bP97952 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Grk6-205ENSMUST00000224653 2976 ntBASIC13.11□□□□□ -0.31
Scn1bP97952 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Scn1bP97952 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Scn1bP97952 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Scn1bP97952 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC13.11□□□□□ -0.31
Scn1bP97952 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Scn1bP97952 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC13.11□□□□□ -0.31
Scn1bP97952 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 AC121801.1-201ENSMUST00000225363 1899 ntBASIC13.11□□□□□ -0.31
Scn1bP97952 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC13.11□□□□□ -0.31
Scn1bP97952 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC13.11□□□□□ -0.31
Scn1bP97952 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC13.11□□□□□ -0.31
Scn1bP97952 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC13.11□□□□□ -0.31
Scn1bP97952 Gm15165-201ENSMUST00000118140 502 ntBASIC13.11□□□□□ -0.31
Scn1bP97952 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Gm9172-201ENSMUST00000212092 954 ntBASIC13.11□□□□□ -0.31
Scn1bP97952 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC13.11□□□□□ -0.31
Scn1bP97952 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Scn1bP97952 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
Scn1bP97952 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
Scn1bP97952 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Scn1bP97952 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC13.1□□□□□ -0.31
Scn1bP97952 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Scn1bP97952 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Scn1bP97952 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Scn1bP97952 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC13.1□□□□□ -0.31
Scn1bP97952 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC13.1□□□□□ -0.31
Scn1bP97952 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC13.1□□□□□ -0.31
Scn1bP97952 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 AC108846.1-201ENSMUST00000214531 513 ntBASIC13.1□□□□□ -0.31
Scn1bP97952 AC154471.1-201ENSMUST00000224418 436 ntBASIC13.1□□□□□ -0.31
Scn1bP97952 Vti1a-206ENSMUST00000225529 1244 ntBASIC13.1□□□□□ -0.31
Scn1bP97952 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC13.1□□□□□ -0.31
Scn1bP97952 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Scn1bP97952 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC13.1□□□□□ -0.31
Scn1bP97952 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
Scn1bP97952 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Scn1bP97952 Gm29361-201ENSMUST00000183323 2000 ntBASIC13.1□□□□□ -0.31
Scn1bP97952 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms