Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 BC001981-202ENSMUST00000191393 1545 ntBASIC12.37□□□□□ -0.43
Nkx3-1P97436 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Gm6912-201ENSMUST00000117218 544 ntBASIC12.37□□□□□ -0.43
Nkx3-1P97436 Gm11478-201ENSMUST00000117851 599 ntBASIC12.37□□□□□ -0.43
Nkx3-1P97436 Gm12138-201ENSMUST00000122180 951 ntBASIC12.37□□□□□ -0.43
Nkx3-1P97436 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Gm31326-201ENSMUST00000191856 1048 ntBASIC12.37□□□□□ -0.43
Nkx3-1P97436 Gm33320-201ENSMUST00000192232 530 ntBASIC12.37□□□□□ -0.43
Nkx3-1P97436 Gm43433-201ENSMUST00000196573 481 ntBASIC12.37□□□□□ -0.43
Nkx3-1P97436 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Gm45668-201ENSMUST00000211271 493 ntBASIC12.37□□□□□ -0.43
Nkx3-1P97436 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC12.37□□□□□ -0.43
Nkx3-1P97436 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Gm5763-201ENSMUST00000155951 1530 ntBASIC12.37□□□□□ -0.43
Nkx3-1P97436 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Gm9115-201ENSMUST00000120192 1348 ntBASIC12.37□□□□□ -0.43
Nkx3-1P97436 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Nkx3-1P97436 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC12.36□□□□□ -0.43
Nkx3-1P97436 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
Nkx3-1P97436 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC12.36□□□□□ -0.43
Nkx3-1P97436 AC130829.1-201ENSMUST00000221548 494 ntBASIC12.36□□□□□ -0.43
Nkx3-1P97436 AC154846.1-201ENSMUST00000226278 862 ntBASIC12.36□□□□□ -0.43
Nkx3-1P97436 AC123645.1-201ENSMUST00000228469 605 ntBASIC12.36□□□□□ -0.43
Nkx3-1P97436 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Nkx3-1P97436 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC12.35□□□□□ -0.43
Nkx3-1P97436 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Gm12585-201ENSMUST00000117307 290 ntBASIC12.35□□□□□ -0.43
Nkx3-1P97436 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 85.2 ms