Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cbx4O55187 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cbx4O55187 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
Cbx4O55187 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC14.05□□□□□ -0.16
Cbx4O55187 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cbx4O55187 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cbx4O55187 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Cbx4O55187 AC124549.3-201ENSMUST00000225541 367 ntBASIC14.05□□□□□ -0.16
Cbx4O55187 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cbx4O55187 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cbx4O55187 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC14.05□□□□□ -0.16
Cbx4O55187 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cbx4O55187 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Cbx4O55187 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cbx4O55187 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Cbx4O55187 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC14.05□□□□□ -0.16
Cbx4O55187 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cbx4O55187 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cbx4O55187 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cbx4O55187 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cbx4O55187 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cbx4O55187 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cbx4O55187 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Cbx4O55187 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Cbx4O55187 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC14.04□□□□□ -0.16
Cbx4O55187 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Cbx4O55187 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Cbx4O55187 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Cbx4O55187 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Gm38225-201ENSMUST00000194001 393 ntBASIC14.04□□□□□ -0.16
Cbx4O55187 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC14.04□□□□□ -0.16
Cbx4O55187 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC14.04□□□□□ -0.16
Cbx4O55187 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cbx4O55187 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC14.03□□□□□ -0.16
Cbx4O55187 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Cbx4O55187 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC14.03□□□□□ -0.16
Cbx4O55187 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC14.03□□□□□ -0.16
Cbx4O55187 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Cbx4O55187 Ighv8-7-201ENSMUST00000194349 297 ntBASIC14.03□□□□□ -0.16
Cbx4O55187 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Cbx4O55187 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Cbx4O55187 Gm13332-201ENSMUST00000120451 1398 ntBASIC14.03□□□□□ -0.16
Cbx4O55187 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Cbx4O55187 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cbx4O55187 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Cbx4O55187 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Cbx4O55187 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cbx4O55187 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
Cbx4O55187 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cbx4O55187 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cbx4O55187 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cbx4O55187 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.16
Cbx4O55187 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
Cbx4O55187 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Cbx4O55187 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Cbx4O55187 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cbx4O55187 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
Cbx4O55187 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cbx4O55187 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC14.02□□□□□ -0.16
Cbx4O55187 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cbx4O55187 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Cbx4O55187 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms