Protein–RNA interactions for Protein: Q9JKS4

Ldb3, LIM domain-binding protein 3, mousemouse

Known RBP Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ldb3Q9JKS4 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Nupl1-207ENSMUST00000225311 2475 ntBASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 AC148324.1-201ENSMUST00000219034 4240 ntBASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Gm6222-201ENSMUST00000120787 396 ntBASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ldb3Q9JKS4 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ldb3Q9JKS4 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Ldb3Q9JKS4 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC13.02□□□□□ -0.32
Ldb3Q9JKS4 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ldb3Q9JKS4 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ldb3Q9JKS4 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Ldb3Q9JKS4 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Gm5867-201ENSMUST00000063197 592 ntBASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Ssr1-204ENSMUST00000225319 1610 ntBASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ldb3Q9JKS4 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Gm7336-201ENSMUST00000107041 1232 ntBASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Gm15693-201ENSMUST00000120470 637 ntBASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Gm9719-201ENSMUST00000162765 543 ntBASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Gm25948-201ENSMUST00000175334 112 ntBASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 AC149588.3-201ENSMUST00000227515 150 ntBASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Ldb3Q9JKS4 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Ldb3Q9JKS4 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC13□□□□□ -0.33
Ldb3Q9JKS4 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms