Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Gm13316-201ENSMUST00000140537 691 ntBASIC19.16■□□□□ 0.66
Scn4aQ9ER60 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Gm5896-201ENSMUST00000189662 1024 ntBASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Gm31256-201ENSMUST00000194705 506 ntBASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Scn4aQ9ER60 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Scn4aQ9ER60 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Scn4aQ9ER60 Gm13047-201ENSMUST00000117116 815 ntBASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Gm9540-201ENSMUST00000188230 478 ntBASIC19.14■□□□□ 0.65
Scn4aQ9ER60 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn4aQ9ER60 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Gm13097-201ENSMUST00000210722 397 ntBASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms