Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Gm44645-201ENSMUST00000205492 1653 ntBASIC14.01□□□□□ -0.17
Msh4Q99MT2 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Nudt18-203ENSMUST00000228768 1578 ntBASIC14□□□□□ -0.17
Msh4Q99MT2 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC14□□□□□ -0.17
Msh4Q99MT2 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC14□□□□□ -0.17
Msh4Q99MT2 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC14□□□□□ -0.17
Msh4Q99MT2 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Msh4Q99MT2 Gm6973-201ENSMUST00000117080 721 ntBASIC14□□□□□ -0.17
Msh4Q99MT2 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
Msh4Q99MT2 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC14□□□□□ -0.17
Msh4Q99MT2 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC14□□□□□ -0.17
Msh4Q99MT2 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC14□□□□□ -0.17
Msh4Q99MT2 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Msh4Q99MT2 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC14□□□□□ -0.17
Msh4Q99MT2 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Msh4Q99MT2 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
Msh4Q99MT2 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC14□□□□□ -0.17
Msh4Q99MT2 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC14□□□□□ -0.17
Msh4Q99MT2 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC14□□□□□ -0.17
Msh4Q99MT2 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC14□□□□□ -0.17
Msh4Q99MT2 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Msh4Q99MT2 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msh4Q99MT2 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
Msh4Q99MT2 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Gm21451-201ENSMUST00000111062 2775 ntBASIC13.99□□□□□ -0.17
Msh4Q99MT2 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Gm43474-201ENSMUST00000196415 774 ntBASIC13.99□□□□□ -0.17
Msh4Q99MT2 Gm43125-201ENSMUST00000201724 730 ntBASIC13.99□□□□□ -0.17
Msh4Q99MT2 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Msh4Q99MT2 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Msh4Q99MT2 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Pcgf5-211ENSMUST00000225920 6443 ntBASIC13.98□□□□□ -0.17
Msh4Q99MT2 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC13.98□□□□□ -0.17
Msh4Q99MT2 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Gm6018-201ENSMUST00000216090 1306 ntBASIC13.98□□□□□ -0.17
Msh4Q99MT2 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msh4Q99MT2 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms