Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clp1Q99LI9 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC15.07■□□□□ 0
Clp1Q99LI9 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Gm38037-201ENSMUST00000192600 1624 ntBASIC15.06■□□□□ 0
Clp1Q99LI9 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Clp1Q99LI9 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
Clp1Q99LI9 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Clp1Q99LI9 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Gm11524-201ENSMUST00000119349 807 ntBASIC15.06■□□□□ 0
Clp1Q99LI9 Gm14660-201ENSMUST00000119809 575 ntBASIC15.06■□□□□ 0
Clp1Q99LI9 Trav4d-2-201ENSMUST00000120914 335 ntBASIC15.06■□□□□ 0
Clp1Q99LI9 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC15.06■□□□□ 0
Clp1Q99LI9 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC15.06■□□□□ 0
Clp1Q99LI9 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
Clp1Q99LI9 Gm15429-201ENSMUST00000151268 798 ntBASIC15.06■□□□□ 0
Clp1Q99LI9 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Gm43094-201ENSMUST00000196549 921 ntBASIC15.06■□□□□ 0
Clp1Q99LI9 Gm7561-201ENSMUST00000211203 886 ntBASIC15.06■□□□□ 0
Clp1Q99LI9 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
Clp1Q99LI9 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Clp1Q99LI9 AL645783.1-201ENSMUST00000221416 1832 ntBASIC15.06■□□□□ 0
Clp1Q99LI9 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC15.05■□□□□ 0
Clp1Q99LI9 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC15.05■□□□□ 0
Clp1Q99LI9 AC133083.1-201ENSMUST00000221736 2209 ntBASIC15.05■□□□□ 0
Clp1Q99LI9 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Clp1Q99LI9 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC15.05■□□□□ 0
Clp1Q99LI9 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC15.05■□□□□ -0
Clp1Q99LI9 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC15.05■□□□□ -0
Clp1Q99LI9 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC15.05■□□□□ -0
Clp1Q99LI9 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Clp1Q99LI9 Gm37424-201ENSMUST00000191727 561 ntBASIC15.05■□□□□ -0
Clp1Q99LI9 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC15.05■□□□□ -0
Clp1Q99LI9 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Rassf8-202ENSMUST00000058538 1131 ntBASIC15.05■□□□□ -0
Clp1Q99LI9 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC15.05■□□□□ -0
Clp1Q99LI9 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Clp1Q99LI9 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Clp1Q99LI9 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC15.05■□□□□ -0
Clp1Q99LI9 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Clp1Q99LI9 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC15.05■□□□□ -0
Clp1Q99LI9 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clp1Q99LI9 Gm44443-201ENSMUST00000204396 5633 ntBASIC15.04■□□□□ -0
Clp1Q99LI9 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Clp1Q99LI9 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC15.04■□□□□ -0
Clp1Q99LI9 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
Clp1Q99LI9 Gm12928-201ENSMUST00000117115 573 ntBASIC15.04■□□□□ -0
Clp1Q99LI9 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC15.04■□□□□ -0
Clp1Q99LI9 Gm8062-201ENSMUST00000139696 444 ntBASIC15.04■□□□□ -0
Clp1Q99LI9 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC15.04■□□□□ -0
Clp1Q99LI9 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC15.04■□□□□ -0
Clp1Q99LI9 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC15.04■□□□□ -0
Clp1Q99LI9 Gm8652-201ENSMUST00000181363 964 ntBASIC15.04■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms