Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc9Q8VC31 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Mir7071-201ENSMUST00000184847 69 ntBASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Gm8242-201ENSMUST00000193029 1420 ntBASIC17.3■□□□□ 0.36
Ccdc9Q8VC31 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Ccdc9Q8VC31 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Gm11355-201ENSMUST00000121120 306 ntBASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 AC164426.2-201ENSMUST00000225993 2492 ntBASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ccdc9Q8VC31 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Il17rd-203ENSMUST00000225146 3366 ntBASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Gm18421-201ENSMUST00000204122 625 ntBASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms