Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 CT030684.1-201ENSMUST00000227292 914 ntBASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Gm9252-201ENSMUST00000172364 1602 ntBASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Ushbp1Q8R370 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Gm37230-201ENSMUST00000194491 818 ntBASIC16.11■□□□□ 0.17
Ushbp1Q8R370 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ushbp1Q8R370 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Gm13223-201ENSMUST00000118609 747 ntBASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC16.1■□□□□ 0.17
Ushbp1Q8R370 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms