Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp7Q8R1T1 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC18.31■□□□□ 0.52
Chmp7Q8R1T1 Gm5279-201ENSMUST00000199575 745 ntBASIC18.31■□□□□ 0.52
Chmp7Q8R1T1 Gm17795-201ENSMUST00000214505 757 ntBASIC18.31■□□□□ 0.52
Chmp7Q8R1T1 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp7Q8R1T1 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp7Q8R1T1 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp7Q8R1T1 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Chmp7Q8R1T1 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp7Q8R1T1 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp7Q8R1T1 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Chmp7Q8R1T1 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp7Q8R1T1 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Chmp7Q8R1T1 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Gm42690-201ENSMUST00000197921 1836 ntBASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Gm12960-201ENSMUST00000120017 1066 ntBASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Gm9002-201ENSMUST00000178437 499 ntBASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Gm27701-201ENSMUST00000184498 110 ntBASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Ighv8-14-201ENSMUST00000196781 358 ntBASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp7Q8R1T1 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Gm29340-201ENSMUST00000188763 3854 ntBASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 AC162801.1-201ENSMUST00000220612 198 ntBASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 CT030657.3-201ENSMUST00000222707 1200 ntBASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp7Q8R1T1 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms