Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28bQ8CEG5 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC14.22□□□□□ -0.13
Ccdc28bQ8CEG5 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28bQ8CEG5 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Gm15593-201ENSMUST00000122085 1008 ntBASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 AC154595.3-201ENSMUST00000224579 384 ntBASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Gm44414-201ENSMUST00000203660 2109 ntBASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28bQ8CEG5 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc28bQ8CEG5 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc28bQ8CEG5 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.14
Ccdc28bQ8CEG5 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc28bQ8CEG5 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc28bQ8CEG5 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc28bQ8CEG5 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc28bQ8CEG5 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Gm7284-201ENSMUST00000131667 944 ntBASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28bQ8CEG5 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Gm3928-201ENSMUST00000121141 1307 ntBASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Gm5682-201ENSMUST00000173402 505 ntBASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC14.19□□□□□ -0.14
Ccdc28bQ8CEG5 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms