Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC19.62■□□□□ 0.73
Usp40Q8BWR4 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp40Q8BWR4 AC162801.1-201ENSMUST00000220612 198 ntBASIC19.62■□□□□ 0.73
Usp40Q8BWR4 AC139350.3-201ENSMUST00000226151 420 ntBASIC19.62■□□□□ 0.73
Usp40Q8BWR4 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Usp40Q8BWR4 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC19.62■□□□□ 0.73
Usp40Q8BWR4 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Usp40Q8BWR4 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC19.62■□□□□ 0.73
Usp40Q8BWR4 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp40Q8BWR4 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp40Q8BWR4 AC154527.2-201ENSMUST00000225256 1466 ntBASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Gm11918-201ENSMUST00000121660 179 ntBASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp40Q8BWR4 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC19.61■□□□□ 0.73
Usp40Q8BWR4 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Gm9109-201ENSMUST00000120254 1405 ntBASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Gm15240-201ENSMUST00000118156 720 ntBASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Gm18027-201ENSMUST00000218947 619 ntBASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp40Q8BWR4 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Usp40Q8BWR4 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Usp40Q8BWR4 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
Usp40Q8BWR4 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Usp40Q8BWR4 Ssr1-204ENSMUST00000225319 1610 ntBASIC19.58■□□□□ 0.73
Usp40Q8BWR4 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Usp40Q8BWR4 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Usp40Q8BWR4 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Usp40Q8BWR4 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Usp40Q8BWR4 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Usp40Q8BWR4 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Usp40Q8BWR4 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Usp40Q8BWR4 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
Usp40Q8BWR4 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Usp40Q8BWR4 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Usp40Q8BWR4 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Usp40Q8BWR4 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC19.58■□□□□ 0.72
Usp40Q8BWR4 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC19.58■□□□□ 0.72
Usp40Q8BWR4 Gm45630-201ENSMUST00000210243 1911 ntBASIC19.58■□□□□ 0.72
Usp40Q8BWR4 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Usp40Q8BWR4 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Usp40Q8BWR4 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Usp40Q8BWR4 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Usp40Q8BWR4 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Usp40Q8BWR4 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Usp40Q8BWR4 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms