Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim28Q62318 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Trim28Q62318 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Trim28Q62318 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim28Q62318 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC18.53■□□□□ 0.56
Trim28Q62318 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Trim28Q62318 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Trim28Q62318 Gm11557-201ENSMUST00000120200 1008 ntBASIC18.53■□□□□ 0.56
Trim28Q62318 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim28Q62318 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Trim28Q62318 Gm8927-201ENSMUST00000181978 981 ntBASIC18.53■□□□□ 0.56
Trim28Q62318 AC155286.1-201ENSMUST00000218632 448 ntBASIC18.53■□□□□ 0.56
Trim28Q62318 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
Trim28Q62318 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim28Q62318 Gm3222-201ENSMUST00000071282 990 ntBASIC18.53■□□□□ 0.56
Trim28Q62318 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trim28Q62318 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Trim28Q62318 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim28Q62318 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim28Q62318 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim28Q62318 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim28Q62318 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim28Q62318 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Trim28Q62318 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim28Q62318 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim28Q62318 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC18.52■□□□□ 0.56
Trim28Q62318 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim28Q62318 Ighv5-13-201ENSMUST00000193550 290 ntBASIC18.52■□□□□ 0.56
Trim28Q62318 Gm45059-201ENSMUST00000205558 1077 ntBASIC18.52■□□□□ 0.56
Trim28Q62318 Gm4971-201ENSMUST00000205991 1108 ntBASIC18.52■□□□□ 0.56
Trim28Q62318 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC18.52■□□□□ 0.56
Trim28Q62318 AC131690.1-201ENSMUST00000218406 374 ntBASIC18.52■□□□□ 0.56
Trim28Q62318 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Trim28Q62318 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC18.52■□□□□ 0.56
Trim28Q62318 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim28Q62318 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim28Q62318 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Trim28Q62318 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Trim28Q62318 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim28Q62318 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim28Q62318 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim28Q62318 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.55
Trim28Q62318 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim28Q62318 AC168058.1-201ENSMUST00000219521 2282 ntBASIC18.52■□□□□ 0.55
Trim28Q62318 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Trim28Q62318 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim28Q62318 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim28Q62318 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC18.52■□□□□ 0.55
Trim28Q62318 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim28Q62318 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim28Q62318 Gm12620-201ENSMUST00000119791 1986 ntBASIC18.51■□□□□ 0.55
Trim28Q62318 Gm12612-201ENSMUST00000140182 1986 ntBASIC18.51■□□□□ 0.55
Trim28Q62318 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC18.51■□□□□ 0.55
Trim28Q62318 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Trim28Q62318 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Trim28Q62318 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC18.51■□□□□ 0.55
Trim28Q62318 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC18.51■□□□□ 0.55
Trim28Q62318 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC18.51■□□□□ 0.55
Trim28Q62318 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC18.51■□□□□ 0.55
Trim28Q62318 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Trim28Q62318 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC18.51■□□□□ 0.55
Trim28Q62318 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC18.51■□□□□ 0.55
Trim28Q62318 AC130829.1-201ENSMUST00000221548 494 ntBASIC18.51■□□□□ 0.55
Trim28Q62318 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Trim28Q62318 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Trim28Q62318 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim28Q62318 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim28Q62318 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim28Q62318 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim28Q62318 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim28Q62318 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC18.5■□□□□ 0.55
Trim28Q62318 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim28Q62318 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Trim28Q62318 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim28Q62318 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim28Q62318 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim28Q62318 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim28Q62318 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Trim28Q62318 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms