Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
Limch1Q3UH68 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Limch1Q3UH68 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Limch1Q3UH68 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Gm7336-201ENSMUST00000107041 1232 ntBASIC16.92■□□□□ 0.3
Limch1Q3UH68 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Gm9182-201ENSMUST00000217829 639 ntBASIC16.92■□□□□ 0.3
Limch1Q3UH68 AC126408.1-201ENSMUST00000225184 523 ntBASIC16.92■□□□□ 0.3
Limch1Q3UH68 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 AC154767.3-201ENSMUST00000225150 1342 ntBASIC16.92■□□□□ 0.3
Limch1Q3UH68 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Limch1Q3UH68 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Gm14042-201ENSMUST00000120139 833 ntBASIC16.91■□□□□ 0.3
Limch1Q3UH68 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC16.91■□□□□ 0.3
Limch1Q3UH68 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Gm27622-201ENSMUST00000183779 60 ntBASIC16.91■□□□□ 0.3
Limch1Q3UH68 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Limch1Q3UH68 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Limch1Q3UH68 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Limch1Q3UH68 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Limch1Q3UH68 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Limch1Q3UH68 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Limch1Q3UH68 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Limch1Q3UH68 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Limch1Q3UH68 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Limch1Q3UH68 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Limch1Q3UH68 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC16.9■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms