Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 AC151286.1-201ENSMUST00000198489 145 ntBASIC13.97□□□□□ -0.17
Col28a1Q2UY11 AC084391.1-201ENSMUST00000200651 141 ntBASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Gm42872-201ENSMUST00000200026 1967 ntBASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Gm26308-201ENSMUST00000157768 69 ntBASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Gm10175-201ENSMUST00000086013 645 ntBASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col28a1Q2UY11 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC13.96□□□□□ -0.18
Col28a1Q2UY11 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col28a1Q2UY11 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col28a1Q2UY11 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC13.96□□□□□ -0.18
Col28a1Q2UY11 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col28a1Q2UY11 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Col28a1Q2UY11 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Gm7063-201ENSMUST00000186840 981 ntBASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Ndufaf2-202ENSMUST00000223734 556 ntBASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Gm5648-201ENSMUST00000122244 1587 ntBASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col28a1Q2UY11 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms