Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Nkx3-1P97436 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Gm15163-201ENSMUST00000120749 1302 ntBASIC12.39□□□□□ -0.43
Nkx3-1P97436 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC12.39□□□□□ -0.43
Nkx3-1P97436 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Gm28760-201ENSMUST00000185995 736 ntBASIC12.39□□□□□ -0.43
Nkx3-1P97436 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Gm6916-202ENSMUST00000205523 195 ntBASIC12.39□□□□□ -0.43
Nkx3-1P97436 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC12.39□□□□□ -0.43
Nkx3-1P97436 AC165157.4-201ENSMUST00000220587 139 ntBASIC12.39□□□□□ -0.43
Nkx3-1P97436 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Gm9797-201ENSMUST00000052902 613 ntBASIC12.39□□□□□ -0.43
Nkx3-1P97436 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 AC174678.1-201ENSMUST00000228007 2749 ntBASIC12.39□□□□□ -0.43
Nkx3-1P97436 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Nkx3-1P97436 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
Nkx3-1P97436 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC12.38□□□□□ -0.43
Nkx3-1P97436 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Gm21854-201ENSMUST00000179901 471 ntBASIC12.38□□□□□ -0.43
Nkx3-1P97436 Gm10766-202ENSMUST00000194123 606 ntBASIC12.38□□□□□ -0.43
Nkx3-1P97436 Gm37917-201ENSMUST00000194711 392 ntBASIC12.38□□□□□ -0.43
Nkx3-1P97436 Gm45384-201ENSMUST00000210451 277 ntBASIC12.38□□□□□ -0.43
Nkx3-1P97436 Gm9908-201ENSMUST00000211534 448 ntBASIC12.38□□□□□ -0.43
Nkx3-1P97436 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Gm15823-201ENSMUST00000064305 670 ntBASIC12.38□□□□□ -0.43
Nkx3-1P97436 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Nkx3-1P97436 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms