Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm7775-201ENSMUST00000218871 853 ntBASIC15.19■□□□□ 0.02
Shmt1P50431 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Mir125a-201ENSMUST00000083545 68 ntBASIC15.19■□□□□ 0.02
Shmt1P50431 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Shmt1P50431 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Shmt1P50431 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
Shmt1P50431 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Shmt1P50431 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC15.18■□□□□ 0.02
Shmt1P50431 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Gm14767-201ENSMUST00000121559 586 ntBASIC15.18■□□□□ 0.02
Shmt1P50431 CT025535.1-201ENSMUST00000227172 491 ntBASIC15.18■□□□□ 0.02
Shmt1P50431 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Shmt1P50431 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC15.18■□□□□ 0.02
Shmt1P50431 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Shmt1P50431 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Shmt1P50431 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Shmt1P50431 Gm5763-201ENSMUST00000155951 1530 ntBASIC15.17■□□□□ 0.02
Shmt1P50431 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Shmt1P50431 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Gm44645-201ENSMUST00000205492 1653 ntBASIC15.17■□□□□ 0.02
Shmt1P50431 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC15.17■□□□□ 0.02
Shmt1P50431 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC15.17■□□□□ 0.02
Shmt1P50431 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Shmt1P50431 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC15.17■□□□□ 0.02
Shmt1P50431 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC15.17■□□□□ 0.02
Shmt1P50431 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Shmt1P50431 Gm46209-201ENSMUST00000217912 553 ntBASIC15.17■□□□□ 0.02
Shmt1P50431 AC155729.1-201ENSMUST00000227758 544 ntBASIC15.17■□□□□ 0.02
Shmt1P50431 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Shmt1P50431 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Shmt1P50431 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Shmt1P50431 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Shmt1P50431 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC15.16■□□□□ 0.02
Shmt1P50431 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Shmt1P50431 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Shmt1P50431 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Shmt1P50431 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Shmt1P50431 Cd63-ps-201ENSMUST00000145417 875 ntBASIC15.16■□□□□ 0.02
Shmt1P50431 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Shmt1P50431 Mir6977-201ENSMUST00000184960 64 ntBASIC15.16■□□□□ 0.02
Shmt1P50431 Gm43703-201ENSMUST00000200523 763 ntBASIC15.16■□□□□ 0.02
Shmt1P50431 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC15.16■□□□□ 0.02
Shmt1P50431 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC15.16■□□□□ 0.02
Shmt1P50431 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Shmt1P50431 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Shmt1P50431 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 102.6 ms